Fusobacterium polymorphum Taxonomy and Phylogeny
Fusobacterium polymorphum is a subspecies of Fusobacterium nucleatum , which is a member of the phylum Fusobacteriota and family Fusobacteriaceae .[ 1] Having originally been grouped together with Bacteroides , as well as other Gram-negative anaerobes , advances in genetic analysis have made it clear that Fusobacterium are actually phylogenetically closer in relation to organisms such as those of the genus Leptotrichia .[ 6] Additionally, with the complete genome sequencing of the core species , F. nucleatum , it has been discovered that approximately 35-56% of Fusobacterium genes likely have been acquired from Bacteroidetes , Proteobacteria , Spirochaetes , and Firmicutes , as a result of horizontal gene transfer .[ 6] More specifically, further analysis has led to suggestions that the genes responsible for coding Fusobacterium's Gram-negative cell wall , may have origins tracing back to Proteobacteria .[ 6]
Discovery
History
The initial discovery of F. nucleatum came close to 70 years prior to the distinction of its subspecies strains .[ 7] It was not until work from Dzink, Sheenan, and Scransky that the first three subspecies , one of which was F. polymorphum, were initially proposed.[ 2]
Physiology
F. polymorphum , like all other subspecies of F. nucleatum , is a bacillus -shaped, Gram-negative anaerobic microbe .[ 3] [ 10] It has been found that optimum growth for F. polymorphum is at around a pH of 7.4, with a generation time of 3.5 hours.[ 11] However, it was discovered that this optimum growth rate was only applicable in cultures that were limited in glucose , histidine , and serine .[ 11]
In order to thrive in anaerobic environments , F. polymorphum , along with its sister subspecies , have evolved metabolic pathways that do not require oxygen .[ 10] This microbe does this through fermentation , where it breaks down a variety of organic compounds into ATP and a range of end-products , including acetate , butyrate , and ammonia .[ 3] [ 11] F. polymorphum feeds off of its host's nutritional consumption and begins its fermentation process by undergoing glycolysis to produce pyruvate , in order to metabolize the sugars consumed for the fulfillment of its energy production needs.[ 3] From here, in the absence of oxygen , pyruvate is able to be fermented and converted into various end products , along with the regeneration of NAD+ , which allows for glycolysis to continue and, thus, a constant production of ATP .[ 3]
Ecology
Fusobacterium polymorphum , along with its sister subspecies , is readily found within the plaque of human teeth , as well as within periodontal pockets , being one of the many bacteria within the oral microbiota involved in the inflammation of the gums .[ 10] On top of this, F. polymorphum has also been found to inhabit areas of the gastrointestinal tract , making it closely associated with intestinal inflammation and inflammatory bowel disease .[ 12] Nonetheless, in most instances, the mere presence of F. polymorphum within the human body is harmless and does not always lead to the development of disease , as it is an organism that has been commonly found in the mouths of healthy individuals.[ 1] There is the possibility of this strain becoming opportunistic in certain microbial environments , which could potentially result in its increased proliferation and eventual progression towards a number of systemic diseases .[ 1]
Genomics
Genome sequencing has revealed that F. nucleatum ssp. polymorphum (FNP) has about 2.4 million base pairs in its individual chromosome and 11,934 base pairs in its plasmid , making it about 300 thousand base pairs larger than its sister strain F. nucleatum ssp. nucleatum (FNN) , which has a genome consisting of approximately 2.1 million base pairs .[ 3] When comparing F. polymorphum's genome with those of other subspecies , it was found that about 38% of its base pairs were either completely unique to F. polymorphum or shared by only one of the two other subspecies ' genomes being studied.[ 3] This is indicative of F. polymorphum's genetic uniqueness and suggests that it may possess certain characteristic differences than its sister subspecies , particularly in terms of its pathogenic properties.[ 3] For instance, research found 132 predicted proteins that contributed to Fusobacterium's virulence , most of which, however, were found in the subspecies nucleatum and vincentii .[ 3] In the case of F. polymorphum specifically, a few notably identified proteins included a VacJ homolog (FNP_0314), which has demonstrated high involvement in the transmission of Shigella flexneri within cells , MviN (FNP_1360), which is associated with the pathogenicity of Salmonella typhimurium , and VacB (FNP_1921), which is a ribonuclease that promotes the activation of virulent genes in Shigella flexneri .[ 3]
Applications and Future Research
Further research into the subspecies , Fusobacterium polymorphum, is critical in nature, because of the health issues Fusobacterium nucleatum has been known to cause.[ 1] For starters, it is well known that F. nucleatum is a prominent microbe that contributes to the occurrence of periodontitis , an infection of the gums .[ 1] On top of this, it has been found that F. nucleatum has been able to travel across the human body and begin to inhabit different variants of tissue , potentially leading to the development of diseases , such as atherosclerosis , diabetes , and a wide variety of respiratory conditions.[ 1] Given that there are a total of 5 subspecies within F. nucleatum , it is currently unclear whether there is a single specific subspecies that is primarily contributing to all of these disease -related complications, or if each subspecies contributes to its own set of systemic diseases .[ 1] Therefore, further studying of this organism of interest, Fusobacterium polymorphum , would better allow for researchers to attain a better understanding for identifying and establishing specific linkages between our selected subspecies and the plethora of health issues that arise from the general species it falls under.[ 1] Moreover, this increase in research would potentially enable scientists to discover new methods for reducing the growth and proliferation of this microbe through perhaps new means of oral hygiene , for instance, before further development causes any severe damage to the human body .[ 1]
References
1 2 3 4 5 6 7 8 9 10 11 Ma, Xiaomei; Sun, Tianyong; Zhou, Jiannan; Zhi, Mengfan; Shen, Song; Wang, Yushang; Gu, Xiufeng; Li, Zixuan; Gao, Haiting; Wang, Pingping; Feng, Qiang (May–Jun 2023). "Pangenomic Study of Fusobacterium nucleatum Reveals the Distribution of Pathogenic Genes and Functional Clusters at the Subspecies and Strain Levels" . Microbiology Spectrum . 11 (3): e0518422. doi :10.1128/spectrum.05184-22 . PMC 10269558 . PMID 37042769 .
1 2 3 4 5 6 7 8 9 10 11 Dzink, J. L.; Sheenan, M. T.; Socransky, S. S. (1990). "Proposal of three subspecies of Fusobacterium nucleatum Knorr 1922: Fusobacterium nucleatum subsp. nucleatum subsp. nov., comb. nov.; Fusobacterium nucleatum subsp. polymorphum subsp. nov., nom. rev., comb. nov.; and Fusobacterium nucleatum subsp. vincentii subsp. nov., nom. rev., comb. nov". International Journal of Systematic Bacteriology . 40 (1): 74– 78. doi :10.1099/00207713-40-1-74 . ISSN 0020-7713 . PMID 2223601 .
1 2 3 4 5 6 7 8 9 10 11 12 13 14 Karpathy, Sandor E.; Qin, Xiang; Gioia, Jason; Jiang, Huaiyang; Liu, Yamei; Petrosino, Joseph F.; Yerrapragada, Shailaja; Fox, George E.; Haake, Susan Kinder; Weinstock, George M.; Highlander, Sarah K. (2007-08-01). "Genome Sequence of Fusobacterium nucleatum Subspecies Polymorphum — a Genetically Tractable Fusobacterium" . PLOS ONE . 2 (8): e659. doi :10.1371/journal.pone.0000659 . ISSN 1932-6203 . PMC 1924603 . PMID 17668047 .
↑ Goldstein, E. J. C.; Summanen, P. H.; Citron, D. M.; Rosove, M. H.; Finegold, S. M. (1995). "Fatal Sepsis Due to a β-Lactamase-Producing Strain of Fusobacterium nucleatum subspecies polymorphum" . Clinical Infectious Diseases . 20 (4): 797– 800. doi :10.1093/clinids/20.4.797 . ISSN 1058-4838 . PMID 7795076 .
↑ Gmür, Rudolf; Munson, Mark A.; Wade, William G. (2006). "Genotypic and phenotypic characterization of fusobacteria from Chinese and European patients with inflammatory periodontal diseases" . Systematic and Applied Microbiology . 29 (2): 120– 130. doi :10.1016/j.syapm.2005.07.011 . PMID 16464693 .
1 2 3 Mira, Alex; Pushker, Ravindra; Legault, Boris A; Moreira, David; Rodríguez-Valera, Francisco (2004). "Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics" . BMC Evolutionary Biology . 4 (1): 50. doi :10.1186/1471-2148-4-50 . PMC 535925 . PMID 15566569 .
↑ Knorr, M. (1922). Uber die fusospirillare Sysmbiose, die Gattung Fusobacterium (K. B. Lehmann) und Spirillium sputigenum.(Zugleich ein Beitrag zur Bakteriologie der Mundhohle). I. Mitteilung: die Gattung Fusobacterium. Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt , 1 , 536-545.
↑ Smith, G. L. F.; Socransky, S. S.; Smith, C. M. (1989). "Rapid method for the purification of DNA from subgingival microorganisms" . Oral Microbiology and Immunology . 4 (1): 47– 51. doi :10.1111/j.1399-302x.1989.tb00406.x . ISSN 0902-0055 . PMID 2628868 .
↑ Hartford, Trudy; Sneath, P.H.A. (1988). "Distortion of Taxonomic Structure from DNA Relationships due to Different Choice of Reference Strains" . Systematic and Applied Microbiology . 10 (3): 241– 250. doi :10.1016/s0723-2020(88)80008-0 . ISSN 0723-2020 .
1 2 3 Brennan, Caitlin A.; Garrett, Wendy S. (2019). "Fusobacterium nucleatum — symbiont, opportunist and oncobacterium" . Nature Reviews Microbiology . 17 (3): 156– 166. doi :10.1038/s41579-018-0129-6 . ISSN 1740-1526 . PMC 6589823 . PMID 30546113 .
1 2 3 Rogers, A. H.; Zilm, P. S.; Gully, N. J.; Pfennig, A. L.; Marsh, P. D. (1991). "Aspects of the growth and metabolism of Fusobacterium nucleatum ATCC 10953 in continuous culture" . Oral Microbiology and Immunology . 6 (4): 250– 255. doi :10.1111/j.1399-302X.1991.tb00486.x . ISSN 0902-0055 . PMID 1812468 .
1 2 Engevik, Melinda A.; Danhof, Heather A.; Ruan, Wenly; Engevik, Amy C.; Chang-Graham, Alexandra L.; Engevik, Kristen A.; Shi, Zhongcheng; Zhao, Yanling; Brand, Colleen K.; Krystofiak, Evan S.; Venable, Susan; Liu, Xinli; Hirschi, Kendal D.; Hyser, Joseph M.; Spinler, Jennifer K. (2021-04-27). "Fusobacterium nucleatum Secretes Outer Membrane Vesicles and Promotes Intestinal Inflammation" . mBio . 12 (2). doi :10.1128/mBio.02706-20 . ISSN 2150-7511 . PMC 8092269 . PMID 33653893 .
↑ Diaz, P. I; Zilm, P. S; Rogers, A. H (2002). "Fusobacterium nucleatum supports the growth of Porphyromonas gingivalis in oxygenated and carbon-dioxide-depleted environments" . Microbiology . 148 (2): 467– 472. doi :10.1099/00221287-148-2-467 . ISSN 1465-2080 . PMID 11832510 .
↑ Diaz, Patricia I; Zilm, Peter S; Rogers, Anthony H (2000). "The response to oxidative stress of Fusobacterium nucleatum grown in continuous culture" . FEMS Microbiology Letters . 187 (1): 31– 34. doi :10.1111/j.1574-6968.2000.tb09132.x . ISSN 0378-1097 . PMID 10828396 .
Fusobacterium polymorphum