In summer 2015 he was appointed both as an assistant coach of the Rwanda national team, and as manager of Sunrise FC,[6] but in September 2015 became manager of Isonga FC instead.[7] He became manager of the national team on an interim basis in August 2016.[8] In November 2016, Mulisa became manager of APR FC.[9]
He became assistant coach of AS Kigali in July 2021,[10] and became caretaker manager of AS Kigali in December 2021.[11]
