2016 Conference USA baseball tournament
The top eight finishers from the regular season will be seeded one through eight. The tournament will use a double elimination format.[4]
Conference championship
| Conference USA Championship |
| (3) Southern Miss Golden Eagles |
vs. |
(4) Rice Owls |
All–Tournament Team
| Position | Player | Team |
| C | Chuckie Robinson | Southern Miss |
| IF | Aaron Bossi | Marshall |
| IF | Ford Proctor | Rice |
| IF | Connor Teykl | Rice |
| IF | Tim Lynch | Southern Miss |
| OF | Raphael Gladu | Louisiana Tech |
| OF | Corey Bird | Marshall |
| OF | Jake Sandlin | Southern Miss |
| DH | Daniel Keating (MVP) | Southern Miss |
| P | Cody Crouse | FIU |
| P | Chase Boster | Marshall |
| P | Sam Sinnen | Old Dominion |
| P | Jon Duplantier | Rice |