The 2006 Formula Nippon Championship was the thirty-fourth season of premier Japanese single-seater racing, and the eleventh under the Formula Nippon moniker. It was contested over nine rounds at five venues, with Autopolis returning to the calendar for the first time since 1992, replacing Miné Circuit. 12 teams and 25 drivers competed in the championship.
For the first time since 1997, multiple companies supplied engines to Formula Nippon teams, with Toyota and Honda each introducing new three-litre, naturally-aspirated V8 engines derived from their previous offerings in the IndyCar Series. Lola also introduced a new spec chassis, the B06/51 (aka FN06), to replace the previous B03/51 that had served the series since 2003.
‡ Because of heavy rain at Fuji during the race, the event ended after two laps. Half points were awarded because of the stoppage before the 75% point.