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Wikipedia:ReFill/technical

This page documents the architecture of reFill.

Components

Toolbar gadget

ReFillLink.js is a gadget that provides a way to submit a page to reFill in a single click.

Front end

This is a Vue.js single-page application where the user can enter the wiki page to process, select options, submit the page to the reFill API and check the results.

The front end code is bundled using webpack.

Middle layer

Celery is use to queue requests. Key-value data is held in memory using the Redis data store.

Back end

The back end code is written in Python and uses the Flask web framework. Docker provides containerization. Citoid is the main parser, called from citoid.py. Citoid is maintained by the Wikimedia Foundation and uses Zotero. The relationship between Citoid and Zotero is described in a tech talk.

Rather than reFill containing code to cope with the vagaries of thousands of different websites, Zotero translators can be created, benefiting other referencing tools used on Wikipedia.

Hosting

The production Docker container is hosted on the Toolforge PaaS environment, which uses Kubernetes.

https://refill.toolforge.org/ng production front end

contents

/mnt/nfs/labstore-tools-project/refill

config
  /banners.php
  /citoid.php
  /common.php
  /README.md
  /stable.php
  /test.php
Git
  /date
    /src
      /Lang
      /Date.php
      /DateServiceProvider.php
    /tests
      /AutomaticTest.php
      /DateTest.php
      /TranslationKaTest.php
      /TranslationTest.php
    /composer.json
    /generator.php
    /LICENSE
    /phpunit.xml
    /README.md
logs [EMPTY]
old-ng [EMPTY]
refill-ng-dist [EMPTY]
versions
    /citoid
      /backend
      /bower_components
        /bootstrap
        /chosen
        /jquery
      /config
        /config.php
      /docker
        /refill-api
          /Dockerfile
        /refill-worker
          /Dockerfile
      /messages
      /src
        /Intuition
      /vendor
      /web
      /build-images.sh
      /LICENSE.md
      /Makefile
      /README.md
      /start.sh
    /stable
      /config
      /messages
      /src
      /templates
      /tests
        /Reflinks
      /vendor
      /web
        /components
        /hooks
        /ng
        /ng.old
        /scripts
        /style
        /acknowledgments.php
        /api.php
        /index.php
        /index_old.html
        /index_old.php
        /result.php
      /bower.json
      /composer.json
      /LICENSE
      /phpunit.xml.dist
      /Procfile
      /README.md
      /toolinfo.json
    /test
dist.tar.gz
index.html
README
refill2.tgz
replica.my.cnf
service.log
service.manifest
service.template
stats.php
test.php
uniqua.json

https://refill-api.toolforge.org/ production api

contents

/mnt/nfs/labstore-tools-project/refill-api

 /archived
    /refill.yml
    /probe.sh
    /run-probe.sh
    /refill.yaml.old
    /refill-new.yaml
    /deployment.yml
 /refill
    /backend
       /apicache-py3
       /__pycache__
          /celeryconfig.cpython-37.pyc
          /celeryconfig.cpython-34.pyc
       /refill
          /utils
          /transforms
          /dataparsers
          /__pycache__
          /models
          /formatters
          /tasks.py
          /throttle.ctrl
          /__init__.py
       /throttle.ctrl
       /celerybeat-schedule.db
       /celeryconfig.py
       /requirements.txt
       /Pipfile.lock
       /Pipfile
       /app.py
       /pywikibot.lwp
       /celeryconfig.example.py
       /celeryconfig.docker.py
    /web
       /src
       /libs
       /webpack.config.js
       /package-lock.json
       /package.json
       /config.development.js
       /yarn.lock
       /template.html
       /README.md [contains build instructions for prod]
    /messages
    /docker
       /refill-worker
          /Dockerfile
       /refill-api
          /Dockerfile
    /refill
    /apicache
    /__pycache__
       /celeryconfig.cpython-34.pyc
    /worker-logs.txt
    /README.md
    /Makefile
    /start.sh
    /build-images.sh
    /nohup.out
    /throttle.ctrl
    /LICENSE.md
 /www
    /python
       /venv
          /bin
          /share
          /lib
             /python3.7
                /site-packages
          /include
          /pyvenv.cfg
 /logs [empty]
 /uwsgi.log
 /worker-deployment.yml
 /scheduler.sh
 /service.manifest
 /worker.sh
 /service.template
 /requirements.txt (10/1/2019)
 /replica.my.cnf

https://refill-api-test.toolforge.org/ for test use. Probably inactive. Only Zhaofeng Li has access.

contents

/mnt/nfs/labstore-tools-project/refill-api-test

 /logs [EMPTY]
 /refill
   /backend
     /__pycache__
     /apicache-py3
     /refill
       /__pycache__
       /dataparsers
          /__pycache__
          /__init__.py
          /archiveis.py
          /arxiv.py
          /badauthors.py
          /baddates.py
          /citoid.py
          /detectdeadlink.py
          /doi.py
          /download.py
          /jstor.py
          /ncbi.py
          /parsespecial.py
          /parseurl.py
          /README.md
          /ris.py
          /title.py
       /formatters
          /__pycache__
          /__init__.py
          /citetemplate.py
          /formatter.py
          /plainlink.py
       /models
          /__pycache__
          /__init__.py
          /citation.py
          /context.py
       /transforms
          /__pycache__
          /__init__.py
          /fillexternal.py
          /fillref.py
          /mergeref.py
          /transform.py
       /utils
          /__pycache__
          /__init__.py
          /errors.py
          /parser.py
          /test_parser.py
          /utils.py
       /__init__.py
       /tasks.py
       /throttle.ctrl
     /app.py
     /celeryconfig.docker.py
     /celeryconfig.example.py
     /celeryconfig.py
     /Pipfile
     /Pipfile.lock
     /pywikibot.lwp
     /requirements.txt
     /throttle.ctl
   /docker
       /refill-worker
          /Dockerfile
       /refill-api
          /Dockerfile
   /messages
   /web
     /libs
        /wdiff.js
     /src
        /components
          /Change.vue
          /ChangeDetails.vue
          /ErrorDetails.vue
          /PreferencesEditor.vue
        /pages
          /Index.vue
          /LegacyBridge.vue
          /PageNotFound.vue
          /Result.vue
        /App.vue
        /main.js
        /Store.js
        /Utils.js
     /config.development.js
     /package.json
     /package-lock.json
     /README.md
     /template.html
     /webpack.config.js
     /yarn.lock
   /build-images.sh
   /LICENSE.md
   /Makefile
   /README.md
   /start.sh
 /www
   /python
      /venv
 /replica.my.cnf
 /service.manifest
 /uwsgi.log
 /worker.sh
 /worker-deployment.xml

Access to the hosting environment is via PuTTY and WinSCP - PuTTY for SSH command line access, and WinSCP for file transfer.

How to's

Discussions and links

Wikipedia:Village_pump_(proposals)#RfC:_Block_reFill_tool_until_fixed (opened 2022 January 21)
https://github.com/CurbSafeCharmer/refill, GitHub repo for ReFill
User:Zhaofeng Li, original creator of tool
User:Curb Safe Charmer, one of the current maintainers
Search for "ReFill" in all village pumps
User talk:JPxG/Archive16#reFill
User talk:TheresNoTime/Archive 11#ReFill
meta:Community Wishlist Survey 2022/Citations/New reference-filling tool
Phabricator discussion re Citoid support by WMF
Citoid workboard
MfD re shutting down ReferenceExpander
List of refs expanded by ReferenceExpander that need checking