Disk satu

1. "The Root of All Evil" – 9:32
2. "I Walk Beside You" – 4:10
3. "Another Won" – 5:40
4. "Afterlife" – 7:28
5. "Under a Glass Moon" – 7:27
6. "Innocence Faded" – 6:16
7. "Raise the Knife" – 11:51
8. "The Spirit Carries On" – 9:37
9. "Six Degrees of Inner Turbulence" – 41:26
10. "Vacant" – 3:03
11. "The Answer Lies Within" – 5:36
12. "Sacrificed Sons" – 10:36
13. "Octavarium" – 27:29
14. "Metropolis Pt. 1: The Miracle and the Sleeper" – 11:16
15. Credits – 2:53

Disk dua

• "The Score So Far..." 20th Anniversary Documentary – 56:25
• Octavarium Animation – 3:06
• "Another Day" (Live in Tokyo – August 26, 1993) – 4:47
• "The Great Debate" (Live in Bucharest – July 4, 2002) – 13:37
• "Honor Thy Father" (Live in Chicago – August 12, 2005) – 9:47